Site refresh: Minimal Mistakes theme
Just a quick post in case anyone is discombobulated by the changes in the website…
Posts by Tag
misc
A LaTeX template and build code for practical journal submissions
So you’re submitting a manuscript to a journal?
New website! (Migration to GitHub Pages)
I’ve finally updated my website, though not in the way I had hinted at in the old website, shown below:
scQuery
Implementing tied-weights autoencoders in Keras
Before we had ReLUs, batch normalization, and today’s GPU training capabilities, denoising autoencoders (DAEs) [1] were a creative method by which we could t...
Using a VNN architecture
You may have heard of Visible Neural Network (VNN) architectures. These have been introduced and used by computational biologists to enable interpretation of...
scQuery: Introduction
https://scquery.cs.cmu.edu/
deep-learning
Implementing tied-weights autoencoders in Keras
Before we had ReLUs, batch normalization, and today’s GPU training capabilities, denoising autoencoders (DAEs) [1] were a creative method by which we could t...
Using a VNN architecture
You may have heard of Visible Neural Network (VNN) architectures. These have been introduced and used by computational biologists to enable interpretation of...
keras
Implementing tied-weights autoencoders in Keras
Before we had ReLUs, batch normalization, and today’s GPU training capabilities, denoising autoencoders (DAEs) [1] were a creative method by which we could t...
Using a VNN architecture
You may have heard of Visible Neural Network (VNN) architectures. These have been introduced and used by computational biologists to enable interpretation of...
comp-bio
Adapting a classic computer vision algorithm for single cell transcriptomics
This post is about the main idea behind a paper I recently published (and its accompanying software), on a method for aligning scRNA-seq data. Here, aligning...
The adaptive immune system: the body’s Guest Book
In Summer 2019, I was a research intern at Microsoft Research’s Immunomics team in Redmond, WA. Working under Jonathan Carlson, the project was a collaborati...